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Department of Pharmacology

 
Read more at: Design and Evolution of Enhanced Peptide-Peptide Ligation for Modular Transglutaminase Assembly.

Design and Evolution of Enhanced Peptide-Peptide Ligation for Modular Transglutaminase Assembly.

Robust and precise tools are needed to enhance the functionality and resilience of synthetic nanoarchitectures. Here, we have employed directed evolution and rational design to build a fast-acting molecular superglue from a bacterial adhesion protein. We have generated the SnoopLigase2 coupling system, a genetically encoded route for efficient transamidation between SnoopTag2 and DogTag2 peptides. Each peptide was selected for rapid reaction by phage display screening.


Read more at: IP3 receptors: An "elementary" journey from structure to signals.

IP3 receptors: An "elementary" journey from structure to signals.

Inositol 1,4,5-trisphosphate receptors (IP3Rs) are large tetrameric channels which sit mostly in the membrane of the endoplasmic reticulum (ER) and mediate Ca2+ release from intracellular stores in response to extracellular stimuli in almost all cells. Dual regulation of IP3Rs by IP3 and Ca2+ itself, upstream "licensing", and the arrangement of IP3Rs into small clusters in the ER membrane, allow IP3Rs to generate spatially and temporally diverse Ca2+ signals.


Read more at: CysPresso: A classification model utilizing deep learning protein representations to predict recombinant expression of cysteine-dense peptides

CysPresso: A classification model utilizing deep learning protein representations to predict recombinant expression of cysteine-dense peptides

Background: Cysteine-dense peptides (CDPs) are an attractive pharmaceutical scaffold that display extreme biochemical properties, low immunogenicity, and the ability to bind targets with high affinity and selectivity. While many CDPs have potential and confirmed therapeutic uses, synthesis of CDPs is a challenge. Recent advances have made the recombinant expression of CDPs a viable alternative to chemical synthesis. Moreover, identifying CDPs that can be expressed in mammalian cells is crucial in predicting their compatibility with gene therapy and mRNA therapy.


Read more at: GLP-1R is downregulated in beta cells of NOD mice and T1D patients

GLP-1R is downregulated in beta cells of NOD mice and T1D patients

<jats:title>Abstract</jats:title><jats:p>Glucagon-like peptide 1 (GLP-1) is produced by L cells in the small intestine in response to ingested glucose and increases insulin release from pancreatic beta cells by activation of its cognate receptor (GLP-1R). Stimulation of this receptor also contributes to increased beta cell survival and regeneration. We have found that pancreatic beta cells from Non Obese Diabetic (NOD) mice express significantly lower levels of GLP-1R than C57BL/6 mice, leaving the NOD beta cells with an impaired response to GLP-1 stimulation.


Read more at: Gut Reaction: The Impact of a Film on Public Understanding of Gastrointestinal Conditions

Gut Reaction: The Impact of a Film on Public Understanding of Gastrointestinal Conditions

<jats:p>Chronic gastrointestinal (GI) tract conditions, such as inflammatory bowel disease (IBD) and irritable bowel syndrome (IBS) are common conditions associated with disordered bowel movements and significant pain. However, discussion of bowel habits is often regarded as taboo and public understanding of what exactly IBD, IBS and related conditions are, and how they impact the lives of those individuals with such conditions is poorly understood.


Read more at: Selective recognition of inositol phosphates by subtypes of the inositol trisphosphate receptor

Selective recognition of inositol phosphates by subtypes of the inositol trisphosphate receptor

<jats:p>Synthetic analogues of inositol trisphosphate (IP3), all of which included structures equivalent to the 4,5-bisphosphate of (1,4,5)IP3, were used to probe the recognition properties of rat full-length type 1, 2 and 3 IP3 receptors expressed in insect Spodoptera frugiperda 9 cells. Using equilibrium competition binding with [3H](1,4,5)IP3 in Ca2+-free cytosol-like medium, the relative affinities of the receptor subtypes for (1,4,5)IP3 were type 3 (Kd = 11±2nM)&amp;gt;type 2 (Kd = 17±2nM) &amp;gt; type 1 (Kd = 24±4nM).


Read more at: An Irreversible Lock to Proteins for Dynamic Force Spectroscopy at the Mammalian Cell Surface

An Irreversible Lock to Proteins for Dynamic Force Spectroscopy at the Mammalian Cell Surface


Read more at: Spy and Snoop protein superglues for nano-assembly and tickling the immune system

Spy and Snoop protein superglues for nano-assembly and tickling the immune system


Read more at: Visualizing, quantifying, and manipulating mitochondrial DNA in vivo.

Visualizing, quantifying, and manipulating mitochondrial DNA in vivo.

Mitochondrial DNA (mtDNA) encodes proteins and RNAs that support the functions of mitochondria and thereby numerous physiological processes. Mutations of mtDNA can cause mitochondrial diseases and are implicated in aging. The mtDNA within cells is organized into nucleoids within the mitochondrial matrix, but how mtDNA nucleoids are formed and regulated within cells remains incompletely resolved. Visualization of mtDNA within cells is a powerful means by which mechanistic insight can be gained.


Read more at: Visualizing, quantifying and manipulating mitochondrial DNA in vivo.

Visualizing, quantifying and manipulating mitochondrial DNA in vivo.

Mitochondrial DNA (mtDNA) encodes proteins and RNAs that support the functions of mitochondria and thereby numerous physiological processes. Mutations of mtDNA can cause mitochondrial diseases and are implicated in ageing. The mtDNA within cells is organized into nucleoids within the mitochondrial matrix, but how mtDNA nucleoids are formed and regulated within cells remains incompletely resolved. Visualization of mtDNA within cells is a powerful means by which mechanistic insight can be gained.